Cleanup

include/PenningTrap.hpp

@@ -18,6 +18,7 @@
 #include "Particle.hpp"
 #include "constants.hpp"
 #include "typedefs.hpp"
+#include "utils.hpp"
 
 #pragma omp declare reduction(+ : vec_3d : omp_out += omp_in)                  \
     initializer(omp_priv = omp_orig)
@@ -62,7 +63,7 @@ private:
      *
      *  @param i Index i for \f$k_{r,i,j}\f$
      *  @param j Index j for \f$k_{r,i,j}\f$
-     *  @param dt the step length (delta time)
+     *  @param dt The step length (delta time)
      *
      *  @return vec_3d
      * */
@@ -192,6 +193,8 @@ public:
      *  @param steps The amount of steps for the whole simulation
      *  @param method The method to use when moving forward a timestep
      *  @param particle_interaction Turn particle interactions on/off
+     *
+     *  @return simulation_t
      * */
     simulation_t simulate(double time, unsigned int steps,
                           std::string method = "rk4",

include/typedefs.hpp

@@ -15,8 +15,8 @@
 #ifndef __TYPEDEFS__
 #define __TYPEDEFS__
 
-#include <vector>
 #include <armadillo>
+#include <vector>
 
 /** @brief Typedef for the column of the result vector from simulating 
  *  particles.

include/utils.hpp

@@ -19,6 +19,7 @@
 #include <iomanip>
 #include <sstream>
 #include <string>
+#include <sys/stat.h>
 #include <vector>
 
 /** @def DEBUG(msg)
@@ -46,7 +47,7 @@
                                    __LINE__, msg)
 
 /** @def __METHOD_NAME__
- *  @brief Get the name of the current method/function.
+ *  @brief Get the name of the current method/function without the return type.
  * */
 #define __METHOD_NAME__ methodName(__PRETTY_FUNCTION__)
 
@@ -110,7 +111,7 @@ void m_assert(bool expr,
  *
  *  @return bool
  * */
-bool arma_vector_close_to(arma::vec &a, arma::vec &b, double tol=1e-8);
+bool close_to(arma::vec &a, arma::vec &b, double tol=1e-8);
 
 
 /** @brief Takes in the __PRETTY_FUNCTION__ string and removes the return type.
@@ -141,7 +142,7 @@ static inline std::string methodName(const std::string& pretty_function)
  *  @param path The path to be created
  *  @param mode The mode/permissions for all the new directories
  *
- *  @return bool
+ *  @return bool Success/Fail
  * */
 bool mkpath(std::string path, int mode = 0777);