src/scripts/plot_2_particles.py

@@ -1,5 +1,19 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def main():
     files = [
@@ -29,10 +43,10 @@ def main():
     
     plt.xlabel(r"x $(\mu m)$")
     plt.ylabel(r"y $(\mu m)$")
-    plt.title(r"2 particles with and without interactions.")
-    # plt.legend()
-    # plt.show()
-    plt.savefig("../latex/images/plot_2_particles_xy.pdf")
+    # plt.title(r"2 particles with and without interactions.")
+    plt.legend(loc="upper right")
+    plt.savefig("../latex/images/plot_2_particles_xy.pdf", bbox_inches="tight")
+    plt.show()
 
 
 if __name__ == "__main__":

src/scripts/plot_3d.py

@@ -1,5 +1,19 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def main():
     files = [

src/scripts/plot_particles_left.py

@@ -1,6 +1,28 @@
 import matplotlib.pyplot as plt
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def main():
+    colors = [
+        "lightskyblue",
+        "deepskyblue",
+        "salmon",
+        "tomato",
+        "mediumaquamarine",
+        "mediumseagreen"
+    ]
     with open("output/time_dependent_potential/res.txt") as f:
         lines = f.readlines()
         x = []
@@ -14,17 +36,22 @@ def main():
             y2.append(float(l[2]))
             y3.append(float(l[3]))
 
-        plt.plot(x,y1,label=f"amplitude: 0.1")
-        plt.plot(x,y2,label=f"amplitude: 0.4")
-        plt.plot(x,y3,label=f"amplitude: 0.7")
+        fig, ax = plt.subplots()
+        ax.plot(x, y1, label=r"$f_{1} = 0.1$", color=colors[0])
+        ax.plot(x, y2, label=r"$f_{2} = 0.4$", color=colors[2])
+        ax.plot(x, y3, label=r"$f_{3} = 0.7$", color=colors[4])
+
+    ax.set_xlabel(r"Frequency $\omega_V$ (MHz)")
+    ax.set_xlim((0, 2.8))
+    ax.set_ylabel(r"Fraction of particles left")
+    ax.set_ylim((-0.1, 1.1))
+    # plt.title(r"The fraction of particles left in the Penning trap "
+    #           "after 500 microseconds for different amplitudes and frequencies")
+    
+    ax.legend(loc="upper right")
 
-    plt.xlabel(r"$\omega_V$ (MHz)")
-    plt.ylabel(r"Fraction of particles left")
-    plt.title(r"The fraction of particles left in the Penning trap "
-              "after 500 microseconds for different amplitudes and frequencies")
-    plt.legend()
     # plt.show()
-    plt.savefig("../latex/images/particles_left.pdf")
+    fig.savefig("../latex/images/particles_left.pdf", bbox_inches="tight")
 
 if __name__ == "__main__":
     main()

src/scripts/plot_phase_space.py

@@ -1,5 +1,19 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def main():
     directories = {
@@ -21,7 +35,7 @@ def main():
         r"particle 1 v",
         r"particle 2 r",
         r"particle 2 v",
-    ]
+    ] 
     colors = [
         "lightskyblue",
         "deepskyblue",
@@ -44,9 +58,9 @@ def main():
         axs1[i].legend()
         axs1[i].set_title(title)
 
-    # plt.show()
     fig1.savefig("../latex/images/phase_space_2_particles_x.pdf")
     fig2.savefig("../latex/images/phase_space_2_particles_z.pdf")
+    plt.show()
 
 
 if __name__ == "__main__":

src/scripts/plot_relative_error.py

@@ -1,5 +1,19 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def main():
     directories = {
@@ -22,7 +36,7 @@ def main():
         "Relative error for the RK4 method",
         "Relative error for the forward Euler method"
     ]
-    fig1, axs1 = plt.subplots(2,1)
+    fig1, axs1 = plt.subplots(2,1, sharex=True)
     for i, (dir, title) in enumerate(zip(directories, titles)):
         max_err = []
         for label, file in zip(labels, files):
@@ -33,17 +47,17 @@ def main():
                 max_err.append(max(r))
                 axs1[i].plot(t, r, label=label)
         
-            axs1[i].set(xlabel=r"t $(\mu s)$", ylabel = r"relative_error $(\mu m)$")
+            axs1[i].set(ylabel = r"relative_error $(\mu m)$") # xlabel=r"t $(\mu s)$", 
 
-        
+        axs1[1].set_xlabel(r"t $(\mu s)$")
         axs1[i].legend()
-        axs1[i].set_title(title)
+        # axs1[i].set_title(title)
 
         conv_rate = 1/3 * sum([np.log10(max_err[i+1]/max_err[i])/np.log10(.5) for i in range(3)])
         print(conv_rate)
 
-    plt.show()
     # fig1.savefig("../latex/images/phase_space_2_particles_x.pdf")
+    plt.show()
 
 
 if __name__ == "__main__":

src/scripts/plot_single_particle.py

@@ -1,5 +1,19 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import seaborn as sns
+
+sns.set_theme()
+params = {
+    "font.family": "Serif",
+    "font.serif": "Roman", 
+    "text.usetex": True,
+    "axes.titlesize": "large",
+    "axes.labelsize": "large",
+    "xtick.labelsize": "large",
+    "ytick.labelsize": "large",
+    "legend.fontsize": "medium"
+}
+plt.rcParams.update(params)
 
 def z(t):
     V_0 = 25.*9.64852558 * 10**4
@@ -9,6 +23,14 @@ def z(t):
     return 20.*np.cos(w_z*t)
 
 def main():
+    colors = [
+        "lightskyblue",
+        "deepskyblue",
+        "salmon",
+        "tomato",
+        "mediumaquamarine",
+        "mediumseagreen"
+    ]
     filename = "output/simulate_single_particle/particle_0_r.txt"
     r = t = []
     with open(filename) as f:
@@ -16,14 +38,17 @@ def main():
         t = np.linspace(0, 50, len(lines))
         r = np.array([list(map(float, line.strip().split(","))) for line in lines])
 
-    plt.plot(t, r[:, 2], label="approximation")
-    plt.plot(t, z(t), label="analytical")
-    plt.xlabel(r"time $(\mu s)$")
-    plt.ylabel(r"z $(\mu m)$")
-    plt.title(r"Movement of a single particle in the x direction")
-    plt.legend()
-    # plt.savefig("../latex/images/single_particle.pdf")
-    plt.show()
+    fig, ax = plt.subplots()
+    ax.plot(t, r[:, 2], label="approximation", color=colors[3])
+    ax.plot(t, z(t), label="analytical", color=colors[5], linestyle="dotted")
+    ax.set_xlabel(r"Time $(\mu s)$")
+    ax.set_xlim((-5, 55))
+    ax.set_ylabel(r"z $(\mu m)$")
+    ax.set_ylim((-25, 25))
+    # plt.title(r"Movement of a single particle in the x direction")
+    ax.legend(loc="upper right")
+    fig.savefig("../latex/images/single_particle.pdf", bbox_inches="tight")
+    # plt.show()
 
 
 if __name__ == "__main__":