src/scripts/plot_2_particles.py

@@ -45,7 +45,7 @@ def main():
     plt.ylabel(r"y $(\mu m)$")
     # plt.title(r"2 particles with and without interactions.")
     plt.legend(loc="upper right")
-    plt.savefig("../latex/images/plot_2_particles_xy.pdf")
+    plt.savefig("../latex/images/plot_2_particles_xy.pdf", bbox_inches="tight")
     plt.show()
 
 

src/scripts/plot_particles_left.py

@@ -15,6 +15,14 @@ params = {
 plt.rcParams.update(params)
 
 def main():
+    colors = [
+        "lightskyblue",
+        "deepskyblue",
+        "salmon",
+        "tomato",
+        "mediumaquamarine",
+        "mediumseagreen"
+    ]
     with open("output/time_dependent_potential/res.txt") as f:
         lines = f.readlines()
         x = []
@@ -28,17 +36,22 @@ def main():
             y2.append(float(l[2]))
             y3.append(float(l[3]))
 
-        plt.plot(x,y1,label=f"amplitude: 0.1")
-        plt.plot(x,y2,label=f"amplitude: 0.4")
-        plt.plot(x,y3,label=f"amplitude: 0.7")
+        fig, ax = plt.subplots()
+        ax.plot(x, y1, label=r"$f_{1} = 0.1$", color=colors[0])
+        ax.plot(x, y2, label=r"$f_{2} = 0.4$", color=colors[2])
+        ax.plot(x, y3, label=r"$f_{3} = 0.7$", color=colors[4])
+
+    ax.set_xlabel(r"Frequency $\omega_V$ (MHz)")
+    ax.set_xlim((0, 2.8))
+    ax.set_ylabel(r"Fraction of particles left")
+    ax.set_ylim((-0.1, 1.1))
+    # plt.title(r"The fraction of particles left in the Penning trap "
+    #           "after 500 microseconds for different amplitudes and frequencies")
+    
+    ax.legend(loc="upper right")
 
-    plt.xlabel(r"$\omega_V$ (MHz)")
-    plt.ylabel(r"Fraction of particles left")
-    plt.title(r"The fraction of particles left in the Penning trap "
-              "after 500 microseconds for different amplitudes and frequencies")
-    plt.legend()
     # plt.show()
-    plt.savefig("../latex/images/particles_left.pdf")
+    fig.savefig("../latex/images/particles_left.pdf", bbox_inches="tight")
 
 if __name__ == "__main__":
     main()

src/scripts/plot_single_particle.py

@@ -28,6 +28,8 @@ def main():
         "deepskyblue",
         "salmon",
         "tomato",
+        "mediumaquamarine",
+        "mediumseagreen"
     ]
     filename = "output/simulate_single_particle/particle_0_r.txt"
     r = t = []
@@ -35,14 +37,18 @@ def main():
         lines = f.readlines()
         t = np.linspace(0, 50, len(lines))
         r = np.array([list(map(float, line.strip().split(","))) for line in lines])
-    plt.plot(t, r[:, 2], label="approximation", color=colors[1])
-    plt.plot(t, z(t), label="analytical", color=colors[2], linestyle="dotted")
-    plt.xlabel(r"time $(\mu s)$")
-    plt.ylabel(r"z $(\mu m)$")
+
+    fig, ax = plt.subplots()
+    ax.plot(t, r[:, 2], label="approximation", color=colors[3])
+    ax.plot(t, z(t), label="analytical", color=colors[5], linestyle="dotted")
+    ax.set_xlabel(r"Time $(\mu s)$")
+    ax.set_xlim((-5, 55))
+    ax.set_ylabel(r"z $(\mu m)$")
+    ax.set_ylim((-25, 25))
     # plt.title(r"Movement of a single particle in the x direction")
-    plt.legend(loc="lower right")
-    plt.savefig("../latex/images/single_particle.pdf")
-    plt.show()
+    ax.legend(loc="upper right")
+    fig.savefig("../latex/images/single_particle.pdf", bbox_inches="tight")
+    # plt.show()
 
 
 if __name__ == "__main__":