180 lines
14 KiB
HTML
180 lines
14 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
|
|
<head>
|
|
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
|
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
|
|
<meta name="generator" content="Doxygen 1.9.6"/>
|
|
<meta name="viewport" content="width=device-width, initial-scale=1"/>
|
|
<title>Penning Trap Simulation: src/scripts/plot_2_particles.py Source File</title>
|
|
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="jquery.js"></script>
|
|
<script type="text/javascript" src="dynsections.js"></script>
|
|
<link href="navtree.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="resize.js"></script>
|
|
<script type="text/javascript" src="navtreedata.js"></script>
|
|
<script type="text/javascript" src="navtree.js"></script>
|
|
<link href="search/search.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="search/searchdata.js"></script>
|
|
<script type="text/javascript" src="search/search.js"></script>
|
|
<script type="text/x-mathjax-config">
|
|
MathJax.Hub.Config({
|
|
extensions: ["tex2jax.js"],
|
|
jax: ["input/TeX","output/HTML-CSS"],
|
|
});
|
|
</script>
|
|
<script type="text/javascript" async="async" src="https://cdn.jsdelivr.net/npm/mathjax@2/MathJax.js"></script>
|
|
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
|
<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
|
|
</head>
|
|
<body>
|
|
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
|
<div id="titlearea">
|
|
<table cellspacing="0" cellpadding="0">
|
|
<tbody>
|
|
<tr id="projectrow">
|
|
<td id="projectalign">
|
|
<div id="projectname">Penning Trap Simulation
|
|
</div>
|
|
<div id="projectbrief">Simulate particle behavior inside a Penning Trap</div>
|
|
</td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
<!-- end header part -->
|
|
<!-- Generated by Doxygen 1.9.6 -->
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
var searchBox = new SearchBox("searchBox", "search/",'.html');
|
|
/* @license-end */
|
|
</script>
|
|
<script type="text/javascript" src="menudata.js"></script>
|
|
<script type="text/javascript" src="menu.js"></script>
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
$(function() {
|
|
initMenu('',true,false,'search.php','Search');
|
|
$(document).ready(function() { init_search(); });
|
|
});
|
|
/* @license-end */
|
|
</script>
|
|
<div id="main-nav"></div>
|
|
</div><!-- top -->
|
|
<div id="side-nav" class="ui-resizable side-nav-resizable">
|
|
<div id="nav-tree">
|
|
<div id="nav-tree-contents">
|
|
<div id="nav-sync" class="sync"></div>
|
|
</div>
|
|
</div>
|
|
<div id="splitbar" style="-moz-user-select:none;"
|
|
class="ui-resizable-handle">
|
|
</div>
|
|
</div>
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
$(document).ready(function(){initNavTree('plot__2__particles_8py_source.html',''); initResizable(); });
|
|
/* @license-end */
|
|
</script>
|
|
<div id="doc-content">
|
|
<!-- window showing the filter options -->
|
|
<div id="MSearchSelectWindow"
|
|
onmouseover="return searchBox.OnSearchSelectShow()"
|
|
onmouseout="return searchBox.OnSearchSelectHide()"
|
|
onkeydown="return searchBox.OnSearchSelectKey(event)">
|
|
</div>
|
|
|
|
<!-- iframe showing the search results (closed by default) -->
|
|
<div id="MSearchResultsWindow">
|
|
<div id="MSearchResults">
|
|
<div class="SRPage">
|
|
<div id="SRIndex">
|
|
<div id="SRResults"></div>
|
|
<div class="SRStatus" id="Loading">Loading...</div>
|
|
<div class="SRStatus" id="Searching">Searching...</div>
|
|
<div class="SRStatus" id="NoMatches">No Matches</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="header">
|
|
<div class="headertitle"><div class="title">plot_2_particles.py</div></div>
|
|
</div><!--header-->
|
|
<div class="contents">
|
|
<a href="plot__2__particles_8py.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span> </div>
|
|
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
|
|
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="keyword">import</span> matplotlib.pyplot <span class="keyword">as</span> plt</div>
|
|
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="keyword">import</span> numpy <span class="keyword">as</span> np</div>
|
|
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="keyword">import</span> seaborn <span class="keyword">as</span> sns</div>
|
|
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
|
|
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span>sns.set_theme()</div>
|
|
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span>params = {</div>
|
|
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <span class="stringliteral">"font.family"</span>: <span class="stringliteral">"Serif"</span>,</div>
|
|
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="stringliteral">"font.serif"</span>: <span class="stringliteral">"Roman"</span>, </div>
|
|
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="stringliteral">"text.usetex"</span>: <span class="keyword">True</span>,</div>
|
|
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="stringliteral">"axes.titlesize"</span>: <span class="stringliteral">"large"</span>,</div>
|
|
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="stringliteral">"axes.labelsize"</span>: <span class="stringliteral">"large"</span>,</div>
|
|
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="stringliteral">"xtick.labelsize"</span>: <span class="stringliteral">"large"</span>,</div>
|
|
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> <span class="stringliteral">"ytick.labelsize"</span>: <span class="stringliteral">"large"</span>,</div>
|
|
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="stringliteral">"legend.fontsize"</span>: <span class="stringliteral">"medium"</span></div>
|
|
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span>}</div>
|
|
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span>plt.rcParams.update(params)</div>
|
|
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
|
|
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="keyword">def </span>main():</div>
|
|
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> directories = {</div>
|
|
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="stringliteral">"output/simulate_2_particles/no_interaction/"</span>,</div>
|
|
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <span class="stringliteral">"output/simulate_2_particles/with_interaction/"</span>,</div>
|
|
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> }</div>
|
|
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> files = [</div>
|
|
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="stringliteral">"particle_0_r.txt"</span>,</div>
|
|
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="stringliteral">"particle_1_r.txt"</span>,</div>
|
|
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> ]</div>
|
|
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> outputs = [</div>
|
|
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="stringliteral">"../latex/images/simulate_2_particles_no_interaction_xy.pdf"</span>,</div>
|
|
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <span class="stringliteral">"../latex/images/simulate_2_particles_interaction_xy.pdf"</span>,</div>
|
|
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> ]</div>
|
|
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> labels = [</div>
|
|
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="stringliteral">r"$p_1$"</span>,</div>
|
|
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="stringliteral">r"$p_2$"</span>,</div>
|
|
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="stringliteral">r"$\hat{p}_1$"</span>,</div>
|
|
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="stringliteral">r"$\hat{p}_2$"</span>,</div>
|
|
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> ]</div>
|
|
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> colors = [</div>
|
|
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="stringliteral">"seagreen"</span>,</div>
|
|
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="stringliteral">"darkred"</span></div>
|
|
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> ]</div>
|
|
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> start_pos = set()</div>
|
|
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <span class="keywordflow">for</span> dir, output <span class="keywordflow">in</span> zip(directories, outputs):</div>
|
|
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> fig, ax = plt.subplots()</div>
|
|
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="keywordflow">for</span> label, color, file <span class="keywordflow">in</span> zip(labels, colors, files):</div>
|
|
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> <span class="keyword">with</span> open(dir+file) <span class="keyword">as</span> f:</div>
|
|
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> lines = f.readlines()</div>
|
|
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> t = np.linspace(0, 50, len(lines))</div>
|
|
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> r = np.array([list(map(float, line.strip().split(<span class="stringliteral">","</span>))) <span class="keywordflow">for</span> line <span class="keywordflow">in</span> lines])</div>
|
|
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> ax.plot(r[:,0], r[:,1], label=label, color=color)</div>
|
|
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> start_pos.add((r[0,0],r[0,1]))</div>
|
|
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> </div>
|
|
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> <span class="keywordflow">for</span> pos <span class="keywordflow">in</span> start_pos:</div>
|
|
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> ax.plot(*pos, <span class="stringliteral">"o"</span>, color=<span class="stringliteral">"black"</span>)</div>
|
|
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> </div>
|
|
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> ax.set_xlabel(<span class="stringliteral">r"x $(\mu m)$"</span>)</div>
|
|
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> ax.set_ylabel(<span class="stringliteral">r"y $(\mu m)$"</span>)</div>
|
|
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> ax.legend(loc=<span class="stringliteral">"upper right"</span>)</div>
|
|
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> ax.axis(<span class="stringliteral">"equal"</span>)</div>
|
|
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> fig.savefig(output, bbox_inches=<span class="stringliteral">"tight"</span>)</div>
|
|
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
|
|
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> </div>
|
|
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span><span class="keywordflow">if</span> __name__ == <span class="stringliteral">"__main__"</span>:</div>
|
|
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> main()</div>
|
|
</div><!-- fragment --></div><!-- contents -->
|
|
</div><!-- doc-content -->
|
|
<!-- start footer part -->
|
|
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
|
|
<ul>
|
|
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_634e799a3947388232110823971192a8.html">scripts</a></li><li class="navelem"><a class="el" href="plot__2__particles_8py.html">plot_2_particles.py</a></li>
|
|
<li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.6 </li>
|
|
</ul>
|
|
</div>
|
|
</body>
|
|
</html>
|