Merge pull request 'Set up latex structure, and change filename in make file' (#13) from janitaws/latex into develop

Reviewed-on: #13

latex/Makefile

@@ -1,4 +1,4 @@
-SRC=ising_model
+SRC=schrodinger_simulation
 PDFLATEX=pdflatex
 BIBTEX=bibtex
 

latex/references.bib

@@ -0,0 +1,96 @@
+# Schrodinger and Crank-Nicolson
+
+
+
+# Math and statistics
+@book{lindstrom:2016:kalkulus,
+  author    = {Tom Lindstrøm},
+  title     = {Kalkulus},
+  publisher = {Universitetsforlaget},
+  year      = {2016},
+  edition   = {4}
+}
+@book{gjevik:2014:appendix,
+  author    = {Bjørn Gjevik and Morten Wang Fagerland},
+  title     = {Feltteori og vektoranalyse},
+  publisher = {Farleia Forlag},
+  year      = {2018}
+}
+@book{springer:2012:modernstat,
+  author    = {Jay L. Devore and Kenneth N. Berk},
+  title     = {Modern Mathematical Statistics with Application},
+  publisher = {Cham: Springer International Publishing AG},
+  year      = {2021},
+  edition   = {3}
+}
+
+# Python libraries
+@article{hunter:2007:matplotlib,
+  author    = {Hunter, J. D.},
+  title     = {Matplotlib: A 2D graphics environment},
+  journal   = {Computing in Science \& Engineering},
+  volume    = {9},
+  number    = {3},
+  pages     = {90--95},
+  abstract  = {Matplotlib is a 2D graphics package used for Python for
+               application development, interactive scripting, and publication-quality
+               image generation across user interfaces and operating systems.},
+  publisher = {IEEE COMPUTER SOC},
+  doi       = {10.1109/MCSE.2007.55},
+  year      = 2007
+}
+@article{waskom:2021:seaborn,
+  author    = {Michael L. Waskom},
+  title     = {seaborn: statistical data visualization},
+  journal   = {Journal of Open Source Software},
+  volume    = {6},
+  number    = {60},
+  publisher = {The Open Journal},
+  year      = {2021},
+  doi       = {10.21105/joss.03021},
+  url       = {https://doi.org/10.21105/joss.03021},
+  pages     = {3021}
+}
+
+# C++ libraries
+@misc{openmp:2018,
+  author  = {OpenMP},
+  title   = {OpenMP Application Programming Interface},
+  year    = {2018},
+  url     = {https://www.openmp.org/wp-content/uploads/OpenMP-API-Specification-5.0.pdf},
+  urldate = {2023-10-22}
+}
+@inproceedings{gabriel:2004:open_mpi,
+  author    = {Edgar Gabriel and Graham E. Fagg and George Bosilca
+               and Thara Angskun and Jack J. Dongarra and Jeffrey
+               M. Squyres and Vishal Sahay and Prabhanjan Kambadur
+               and Brian Barrett and Andrew Lumsdaine and Ralph
+               H. Castain and David J. Daniel and Richard L. Graham
+               and Timothy S. Woodall},
+  title     = {Open {MPI}: Goals, Concept, and Design of a Next Generation {MPI} Implementation},
+  booktitle = {Proceedings, 11th European PVM/MPI Users' Group Meeting},
+  address   = {Budapest, Hungary},
+  pages     = {97--104},
+  year      = {2004},
+  month     = {September}
+}
+
+# Miscellaneous things
+
+
+
+# Profiler
+@online{scalasca,
+  author  = {M. Geimer and F. Wolf and B.J.N. Wylie and E. Abraham and D. Becker and B. Mohr},
+  title   = {Scalasca},
+  url     = {https://www.scalasca.org/scalasca/about/about.html},
+  urldate = {2023-10-24},
+  note    = {Tool to support performance optimization of parallel programs, measuring and analyzing runtime behavior.}
+}
+@online{scorep,
+  title   = {Score-P: the Scalable Performance Measurement Infrastructure for Parallel Codes},
+  url     = {https://perftools.pages.jsc.fz-juelich.de/cicd/scorep/tags/latest/html/},
+  urldate = {2023-10-24},
+  note    = {Tool suite for profiling and event tracing.}
+}
+

latex/schrodinger_simulation.tex

@@ -0,0 +1,92 @@
+\documentclass[english,notitlepage,reprint,nofootinbib]{revtex4-1}  % defines the basic parameters of the document
+% 
+% For preview: skriv i terminal: latexmk -pdf -pvc filnavn
+% If you want a single-column, remove "reprint"
+
+% Silence warning of revtex4-1
+\usepackage{silence}
+\WarningFilter{revtex4-1}{Repair the float}
+
+% Allows special characters (including æøå)
+\usepackage[utf8]{inputenc}
+\usepackage{fontawesome}
+\usepackage{multirow}
+\usepackage[table]{xcolor}
+% \rowcolors{2}{gray!15}{white}
+% \usepackage{tabularx}
+% \usepackage[english]{babel}
+
+%% Note that you may need to download some of these packages manually, it depends on your setup.
+%% I recommend downloading TeXMaker, because it includes a large library of the most common packages.
+
+\usepackage{physics,amssymb}  % mathematical symbols (physics imports amsmath)
+
+\usepackage{graphicx}         % include graphics such as plots
+\graphicspath{.images/}
+\usepackage{xcolor}           % set colors
+\usepackage{hyperref}         % automagic cross-referencing
+\usepackage{listings}         % display code
+% \usepackage{subfigure}        % imports a lot of cool and useful figure commands
+\usepackage{subcaption}
+% \usepackage{float}
+%\usepackage[section]{placeins}
+\usepackage{algorithm}
+\usepackage[noend]{algpseudocode}
+\usepackage{tikz}
+% \usetikzlibrary{quantikz}
+% defines the color of hyperref objects
+% Blending two colors:  blue!80!black  =  80% blue and 20% black
+\hypersetup{ % this is just my personal choice, feel free to change things
+    colorlinks,
+    linkcolor={red!50!black},
+    citecolor={blue!50!black},
+    urlcolor={blue!80!black}}
+
+% Biblio stuff
+% \def\biblio{\bibliographystyle{plain}\bibliography{../references/references}}
+\newcommand\numberthis{\addtocounter{equation}{1}\tag{\theequation}}
+
+\usepackage{xr}
+\usepackage{subfiles}
+% \externaldocument[M-]{\subfix{main}}
+
+\begin{document}
+
+\title{Simulating the Schrödinger wave equation using the Crank-Nicolson method in 2+1 dimensions}  % self-explanatory
+\author{Cory Alexander Balaton \& Janita Ovidie Sandtrøen Willumsen \\ \faGithub \, \url{https://github.uio.no/FYS3150-G2-2023/Project-4}} % self-explanatory
+\date{\today}                             % self-explanatory
+\noaffiliation                            % ignore this, but keep it.
+
+% Abstract
+% \subfile{sections/abstract}
+
+\maketitle
+
+% Introduction
+% \subfile{sections/introduction}
+
+% Methods
+% \subfile{sections/methods}
+
+% Results
+% \subfile{sections/results}
+
+% Conclusion
+% \subfile{sections/conclusion}
+
+\clearpage
+\newpage
+
+% Appendix
+% \subfile{sections/appendices}
+
+\clearpage
+\onecolumngrid
+
+\bibliographystyle{unsrtnat}
+\bibliography{references}
+
+
+\end{document}
+
+

latex/sections/abstract.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\begin{abstract}
+
+\end{abstract}
+\end{document}

latex/sections/appendices.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\appendix
+
+
+\end{document}

latex/sections/conclusion.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\section{Conclusion}\label{sec:conclusion}
+
+
+\end{document}

latex/sections/introduction.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\section{Introduction}\label{sec:introduction}
+
+
+\end{document}

latex/sections/methods.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\section{Methods}\label{sec:methods}
+
+
+\end{document}

latex/sections/results.tex

@@ -0,0 +1,7 @@
+\documentclass[../schrodinger_simulation.tex]{subfiles}
+
+\begin{document}
+\section{Results}\label{sec:results}
+
+
+\end{document}